Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_86216193_86217526_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

86216193 - 86217526

Intron Length:

1334

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTT|GTGTGTTCA

5'SS Class:

major

3'SS Sequence:

ATTTATGAAGAAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TATTTAT

U12 Branch Point Sequence:

TTGTCTCTATTT

Flanking Amino Acid:

TYCSSRKLPLLPG*

Intron Amino Acid Position:

241

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

64.1

0.33

1.1

61.1

33.1

Major BPS

88.7

0.96

0.8

36.5

Major PPT

53.1

0.07

1.2

54.9

43.3

Minor 5ss

43.7

-0.7

2.6

55.5

43.1

Minor BPS

53.8

0.2

1.9

76.11

41.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028247

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027957

86210888 - 86217538

6651