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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_86217111_86219478_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
86217111 - 86219478
Intron Length:
2368

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TGT|GCCAGCAGA
5'SS Class:
weak_major
3'SS Sequence:
TTTGTTTTGCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
ACTTCCTGTATT
Flanking Amino Acid:
QQSAKVNLSCDDTTEVEPYT
Intron Amino Acid Position:
256

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.5
0.04
1.4
53.9
42.7
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
77.7
0.62
1
73.5
41.9
Minor 5ss
25.8
-2.8
3.7
32.3
42
Minor BPS
57.8
0.33
1.8
75
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028247
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023428
86211802 - 86219580
7779