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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_86293368_86296801_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
86293368 - 86296801
Intron Length:
3434

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAGTAAC
5'SS Class:
major
3'SS Sequence:
TGCCACCAACCAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TTATATTAAACA
Flanking Amino Acid:
EYFEGKRRLILITTPKADNN
Intron Amino Acid Position:
625

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
76.1
32.7
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
57.1
0.16
1
48.4
39.3
Minor 5ss
38.6
-1.3
2.8
51.7
39.2
Minor BPS
59.1
0.28
1.8
73.03
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026691
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018321
86290695 - 86310131
19437