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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_86307641_86309784_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
86307641 - 86309784
Intron Length:
2144

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
ATCCCTTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
TTTTATGTAATC
Flanking Amino Acid:
GGVLELYPINGSSTVDREDI
Intron Amino Acid Position:
834

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
77.6
30.7
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
78.9
0.65
0.8
77.1
30.8
Minor 5ss
33.1
-1.9
3.2
40.3
40.2
Minor BPS
55.8
0.16
2.1
74.77
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026691
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018321
86290695 - 86310131
19437