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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_86318190_86319411_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
86318190 - 86319411
Intron Length:
1222

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TGTCTGCTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TGTTTCTAAAGT
Flanking Amino Acid:
TTALLFRIVLKRKLSWVQWA
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
84.6
33.2
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
70.4
0.46
0.9
62
39.9
Minor 5ss
39.2
-1.2
2.8
51.8
39
Minor BPS
59.7
0.38
2
79.89
42.3

Associated Gene:

Gene:
SLC35A5
Ensembl Gene ID:
ENSAPLG00000005975
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006190
86315964 - 86325014
9051