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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_86319480_86322215_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
86319480 - 86322215
Intron Length:
2736

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
CTTCTTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTATAAT
U12 Branch Point Sequence:
TGGACTATAATG
Flanking Amino Acid:
VFYVLTYLQPAMAVLFSNFV
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
75.9
39.9
Major BPS
75.5
0.63
1.1
76
34.4
Major PPT
86.8
0.83
0.7
80.5
31.5
Minor 5ss
41.5
-0.9
2.8
57.1
41.1
Minor BPS
49
-0.2
1.7
53.66
41.6

Associated Gene:

Gene:
SLC35A5
Ensembl Gene ID:
ENSAPLG00000005975
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006190
86315964 - 86325014
9051