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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_86322350_86324020_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
86322350 - 86324020
Intron Length:
1671

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTACG
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TTCCTCTTAATT
Flanking Amino Acid:
LILALWVKKKEGCLDHPSGC
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.6
1.07
0.7
84.4
33.5
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
86.3
0.82
0.8
77.7
36.7
Minor 5ss
36
-1.6
2.6
43.2
43.8
Minor BPS
75.7
0.89
1.1
84.73
36.1

Associated Gene:

Gene:
SLC35A5
Ensembl Gene ID:
ENSAPLG00000005975
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006190
86315964 - 86325014
9051