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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_86327645_86330776_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
86327645 - 86330776
Intron Length:
3132

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCTTAACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTGTCTTAACA
Flanking Amino Acid:
KETGVITPEEFVAAGDHLVH
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
100
1.18
0.6
100
0
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
81.4
0.71
0.9
77.5
35.6
Minor 5ss
41.7
-0.9
2.9
59.7
44.8
Minor BPS
81
0.97
1.2
86.69
32.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024786
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029668
86325527 - 86332074
6548