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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_86330827_86331986_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
86330827 - 86331986
Intron Length:
1160

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTCATTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
AAATTCTCAACC
Flanking Amino Acid:
HLVHHCPTWQWASGEELKVK
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
75.9
35.2
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
85.6
0.8
0.8
80.2
31.4
Minor 5ss
38.8
-1.3
2.9
45.4
43.9
Minor BPS
62.3
0.36
1.5
67.31
37.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024786
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029668
86325527 - 86332074
6548