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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_86338317_86339021_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
86338317 - 86339021
Intron Length:
705

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CCTTGAAAACTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TTTACCTTGAAA
Flanking Amino Acid:
EESGLLETDDATLDTRQIVE
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
75.7
28.1
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
53.5
0.08
1
45.8
39.6
Minor 5ss
29
-2.4
3.2
35.5
41.5
Minor BPS
72
0.69
1.4
80.83
34

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005997
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006246
86338275 - 86348129
9855