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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_86339178_86339830_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
86339178 - 86339830
Intron Length:
653

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATATCTC
5'SS Class:
major
3'SS Sequence:
TTTTTTCTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
TTTTGTTCAAAT
Flanking Amino Acid:
PRLWLFGYDEQRQPLTVEHM
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
71.2
38.9
Major BPS
77.3
0.68
1
81.5
27
Major PPT
92.2
0.95
0.5
89.3
19.6
Minor 5ss
44.2
-0.6
2.9
61.5
43.4
Minor BPS
56
0.27
2.1
81.38
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005997
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006246
86338275 - 86348129
9855