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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_86339959_86345967_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
86339959 - 86345967
Intron Length:
6009

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
GACTGTTTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTATCTTTAAAT
Flanking Amino Acid:
PPPMCSVHPCRHAEVMKKII
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.2
1.11
0.7
90.9
28.7
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
76.7
0.6
0.9
72.8
42
Minor 5ss
40.2
-1.1
3.1
58.6
45.9
Minor BPS
79.5
1
1.2
90.31
33

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005997
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006246
86338275 - 86348129
9855