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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_86346037_86348047_F

Intron Information:

Intron Rank:
4
Intron Class:
minor
Intron Phase:
2
Intron Coordinates:
86346037 - 86348047
Intron Length:
2011

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
ACACCAAACACAG|G
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
TCCTTAA
U12 Branch Point Sequence:
TTTTCCTTAACA
Flanking Amino Acid:
AEGGGELGVHMYLLIFLKFV
Intron Amino Acid Position:
132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.8
0.21
1.3
64.4
42.3
Major BPS
69.7
0.49
1
59.9
38.5
Major PPT
52.4
0.06
1
44
34.7
Minor 5ss
98.3
1.62
0.6
94.6
16.9
Minor BPS
97.3
1.48
0.5
99.7
14.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005997
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006246
86338275 - 86348129
9855