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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_8636206_8642379_F

Intron Information:

Intron Rank:
139732
Intron Class:
major
Intron Phase:
Intron Coordinates:
8636206 - 8642379
Intron Length:
6174

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
GTTGTACCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TTAAACTTATTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.5
35
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
74.6
0.55
0.9
66.4
39.9
Minor 5ss
37.6
-1.4
2.8
48.3
42.5
Minor BPS
52.5
0.07
1.8
66.26
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025135
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044119
8633428 - 8642554
9127