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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_86382626_86383783_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
86382626 - 86383783
Intron Length:
1158

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACAAGT
5'SS Class:
major
3'SS Sequence:
TTATCAATTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATCAATT
Flanking Amino Acid:
KGKINAWRAKSNNNQQWLQI
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.1
75.5
40.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
73.5
0.53
0.9
67.9
37.5
Minor 5ss
40.7
-1
3
58.6
45.5
Minor BPS
63.4
0.5
1.8
85.14
35.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027299
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029543
86378700 - 86384876
6177