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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_86384464_86384687_F

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
86384464 - 86384687
Intron Length:
224

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTTTGGTTT
5'SS Class:
weak_major
3'SS Sequence:
TTTGTATTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TTTTTACTAATT
Flanking Amino Acid:
KSYTDGKVTEVFSGNENSDG
Intron Amino Acid Position:
157

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.2
0.29
1.2
67
38.7
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
86.8
0.83
0.8
81.4
35.2
Minor 5ss
46.8
-0.3
3.1
65.7
39.8
Minor BPS
61.2
0.43
1.9
85.58
34.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027299
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029543
86378700 - 86384876
6177