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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_86413898_86415942_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
86413898 - 86415942
Intron Length:
2045

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGATA
5'SS Class:
strong_major
3'SS Sequence:
AATCTCATACAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATTCACT
Flanking Amino Acid:
EQRKEKMRKEEEERKKEQEE
Intron Amino Acid Position:
356

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
81.1
32.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
54.1
0.09
1.1
51.6
41
Minor 5ss
35.2
-1.7
3.3
48.1
47.6
Minor BPS
64.2
0.53
2
88.65
36.2

Associated Gene:

Gene:
CCDC181
Ensembl Gene ID:
ENSAPLG00000007434
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007724
86412239 - 86417615
5377