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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_86416888_86417452_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
86416888 - 86417452
Intron Length:
565

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTAGA
5'SS Class:
major
3'SS Sequence:
TCTCTCTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAAAAT
U12 Branch Point Sequence:
TTTCAGTTACCT
Flanking Amino Acid:
RTEECNRAFKEWLKRKREEK
Intron Amino Acid Position:
456

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1
67.8
39.2
Major BPS
62.8
0.32
1.1
67.9
34.4
Major PPT
81.2
0.7
0.7
75.9
26.2
Minor 5ss
30.9
-2.2
2.6
29.8
36.6
Minor BPS
48.6
-0
2.4
78.43
43.5

Associated Gene:

Gene:
CCDC181
Ensembl Gene ID:
ENSAPLG00000007434
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007724
86412239 - 86417615
5377