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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_86419842_86420657_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
86419842 - 86420657
Intron Length:
816

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAACC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCATCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TATATTTTCATT
Flanking Amino Acid:
NTPAEKMAERVLRVLDPAAC
Intron Amino Acid Position:
337

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
1
72.5
37.3
Major BPS
100
1.24
0.5
100
0
Major PPT
80.4
0.68
0.7
78.6
29
Minor 5ss
34.3
-1.8
2.9
37.3
39.7
Minor BPS
53.1
0.18
1.7
72.89
38.6

Associated Gene:

Gene:
BLZF1
Ensembl Gene ID:
ENSAPLG00000007488
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007784
86419656 - 86424969
5314