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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_86420878_86421453_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
86420878 - 86421453
Intron Length:
576

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGATTT
5'SS Class:
weak_major
3'SS Sequence:
CCTTTCTGTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAAAAA
U12 Branch Point Sequence:
CAAACACAAATT
Flanking Amino Acid:
QFRQEMIETQKLLEELMVSL
Intron Amino Acid Position:
263

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
77
32.2
Major BPS
53.6
0.09
1
59.9
32.5
Major PPT
80.6
0.69
0.9
76.1
32.4
Minor 5ss
55.9
0.2
2.7
73.7
36.6
Minor BPS
39.7
-0.7
2
52.86
41.7

Associated Gene:

Gene:
BLZF1
Ensembl Gene ID:
ENSAPLG00000007488
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007784
86419656 - 86424969
5314