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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_86421583_86422560_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
86421583 - 86422560
Intron Length:
978

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTCCTT
5'SS Class:
major
3'SS Sequence:
ATTTCTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
GCTCACTTAAGT
Flanking Amino Acid:
DVWRSKFLASRVMADELTNT
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1.1
67.2
43.7
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
86.8
0.83
0.7
81.7
29.5
Minor 5ss
50
0
2.8
74.1
42.3
Minor BPS
55.1
0.24
1.9
71.33
45

Associated Gene:

Gene:
BLZF1
Ensembl Gene ID:
ENSAPLG00000007488
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007784
86419656 - 86424969
5314