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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_86422761_86423446_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
86422761 - 86423446
Intron Length:
686

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
GGTCTACTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGTAAT
U12 Branch Point Sequence:
CTATTGGTAATA
Flanking Amino Acid:
LSNQLRIQTEVNRELKKLLV
Intron Amino Acid Position:
154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.03
0.7
89.8
22.3
Major BPS
69.2
0.48
1.3
69.7
44.2
Major PPT
70.9
0.47
0.9
67
39.5
Minor 5ss
35.1
-1.7
3.1
48.5
47.2
Minor BPS
44.1
-0.4
2.5
58.77
41.9

Associated Gene:

Gene:
BLZF1
Ensembl Gene ID:
ENSAPLG00000007488
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007784
86419656 - 86424969
5314