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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_86423887_86424912_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
86423887 - 86424912
Intron Length:
1026

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGAATTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TCTTTCTGAATT
Flanking Amino Acid:
MTSLEKVDYASSPIRG
Intron Amino Acid Position:
7

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
1
76.2
39.9
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
74.1
0.54
0.9
71.2
38.6
Minor 5ss
33
-1.9
3.5
49.2
47.1
Minor BPS
72.1
0.77
1.3
84.15
37

Associated Gene:

Gene:
BLZF1
Ensembl Gene ID:
ENSAPLG00000007488
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007784
86419656 - 86424969
5314