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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_86443915_86447459_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
86443915 - 86447459
Intron Length:
3545

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAATA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTTAA
U12 Branch Point Sequence:
TAAATCTTAACC
Flanking Amino Acid:
YYPKDGSVEMYDVKNHRTFL
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
82.6
29.6
Major BPS
73.4
0.58
0.9
63.7
35.1
Major PPT
89.5
0.89
0.6
84.8
22.8
Minor 5ss
37.2
-1.4
3
46.4
43
Minor BPS
71.4
0.65
1.2
73.28
36.8

Associated Gene:

Gene:
NME7
Ensembl Gene ID:
ENSAPLG00000007691
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008012
86443771 - 86516931
73161