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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_86447627_86453264_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
86447627 - 86453264
Intron Length:
5638

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGAATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTCTAT
U12 Branch Point Sequence:
TCTCTTCTATTT
Flanking Amino Acid:
TARKLGSRKEKTLALIKPDA
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
83.6
27.5
Major BPS
61.5
0.29
1.3
62.1
44.1
Major PPT
95
1.01
0.6
88.4
28.7
Minor 5ss
38.8
-1.3
3.1
49.9
40.5
Minor BPS
46.3
-0.2
1.8
64.98
40.4

Associated Gene:

Gene:
NME7
Ensembl Gene ID:
ENSAPLG00000007691
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008012
86443771 - 86516931
73161