About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_86453376_86457101_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
86453376 - 86457101
Intron Length:
3726

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTATTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATCTTTTTATTC
Flanking Amino Acid:
ITKAKMMMLSRKEAVDFYVD
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.5
1
0.8
87.7
27.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
89
0.88
0.7
81.3
36.2
Minor 5ss
33.9
-1.8
3.3
47.8
47.9
Minor BPS
56
0.17
1.5
63.33
37.2

Associated Gene:

Gene:
NME7
Ensembl Gene ID:
ENSAPLG00000007691
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008012
86443771 - 86516931
73161