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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_86457153_86459584_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
86457153 - 86459584
Intron Length:
2432

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAGGTATA
5'SS Class:
major
3'SS Sequence:
TTCTGTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTATCAC
U12 Branch Point Sequence:
TAGCCTGTATCA
Flanking Amino Acid:
YVDHQSKPFYNELLHFITSG
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
80.8
33.6
Major BPS
60.6
0.26
1.3
65.7
41
Major PPT
88.6
0.87
0.7
83.9
31.1
Minor 5ss
39.6
-1.2
3.1
50.6
40.3
Minor BPS
45.2
-0.3
2.2
57.56
42.1

Associated Gene:

Gene:
NME7
Ensembl Gene ID:
ENSAPLG00000007691
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008012
86443771 - 86516931
73161