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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_86459793_86462703_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
86459793 - 86462703
Intron Length:
2911

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTGTTGTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAA
U12 Branch Point Sequence:
ATGTGTTAAATT
Flanking Amino Acid:
GPDSVASAAQELELFFPSSG
Intron Amino Acid Position:
228

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
90.7
21.1
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
82.9
0.74
0.9
80.3
37.3
Minor 5ss
47.8
-0.2
2.8
67.5
37.3
Minor BPS
49.3
0.02
2
69.26
42.8

Associated Gene:

Gene:
NME7
Ensembl Gene ID:
ENSAPLG00000007691
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008012
86443771 - 86516931
73161