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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_86476112_86476981_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
86476112 - 86476981
Intron Length:
870

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTCTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTCATTTAAAG
Flanking Amino Acid:
EGFQISALQMFNMERANVEE
Intron Amino Acid Position:
285

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
80.5
34.9
Major BPS
100
1.24
0.5
100
0
Major PPT
84.8
0.78
0.7
84.8
30
Minor 5ss
44.9
-0.5
3.2
63.2
43.8
Minor BPS
58.9
0.14
1.7
67.39
39.7

Associated Gene:

Gene:
NME7
Ensembl Gene ID:
ENSAPLG00000007691
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008012
86443771 - 86516931
73161