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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_86521837_86528293_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
86521837 - 86528293
Intron Length:
6457

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTACTTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TCTTTCTGATTT
Flanking Amino Acid:
PKYQDRVAPPGLTQVPQVQK
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
1.1
81.4
32.7
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
82.4
0.73
0.7
81.7
30
Minor 5ss
41.6
-0.9
2.6
54
43.3
Minor BPS
57.7
0.32
1.7
75.98
41.3

Associated Gene:

Gene:
ATP1B1
Ensembl Gene ID:
ENSAPLG00000016349
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017066
86517899 - 86530318
12420