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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_8659151_8735950_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8659151 - 8735950
Intron Length:
76800

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTCAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TGGTATTTATCA
Flanking Amino Acid:
RQPRLRLSHKELWDLNRTSV
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
1
74.1
38.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
84.5
0.78
0.8
81.2
36.5
Minor 5ss
32.1
-2
3.1
40.2
45.9
Minor BPS
53.1
0.09
1.8
64.87
41.6

Associated Gene:

Gene:
SEMA3E
Ensembl Gene ID:
ENSAPLG00000013554
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043687
8659024 - 8806419
147396
ENSAPLT00000019752
8659024 - 8806419
147396
ENSAPLT00000014165
8659024 - 8806419
147396