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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_86650071_86660066_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
86650071 - 86660066
Intron Length:
9996

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGACAC
5'SS Class:
major
3'SS Sequence:
ACTTCTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TCTTCTTTCACT
Flanking Amino Acid:
WEEINRAGTEWYQTCSNNGL
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.9
0.52
1.1
58.7
40.6
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
80.1
0.68
0.7
77.9
30.1
Minor 5ss
31
-2.2
3.3
38.6
41
Minor BPS
72.5
0.79
1.7
87.23
39

Associated Gene:

Gene:
DPT
Ensembl Gene ID:
ENSAPLG00000016421
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017139
86649772 - 86675523
25752