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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_86660193_86670922_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
86660193 - 86670922
Intron Length:
10730

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
CCTTCATCTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTCCTTCATC
Flanking Amino Acid:
RYSRRCPYSCWLTTEHPGHY
Intron Amino Acid Position:
142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.8
79.4
29.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
68
0.41
1
67.3
31.8
Minor 5ss
40.6
-1
2.7
47.5
42.3
Minor BPS
76.7
0.82
1.6
86.11
32.2

Associated Gene:

Gene:
DPT
Ensembl Gene ID:
ENSAPLG00000016421
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017139
86649772 - 86675523
25752