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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_86734020_86734696_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
86734020 - 86734696
Intron Length:
677

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TCTGTCTGACTT
Flanking Amino Acid:
EKQQVPLNAVMFITAKGIKI
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
92.9
22.2
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
89.8
0.89
0.6
85.3
22.1
Minor 5ss
44.1
-0.6
2.9
65.1
39.1
Minor BPS
48.6
-0
1.8
67.49
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017786
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027224
86731343 - 86734802
3460