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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_86820481_86821246_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
86820481 - 86821246
Intron Length:
766

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGGTTT
5'SS Class:
major
3'SS Sequence:
TTGCCTCTGCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
CTCTAATTATCA
Flanking Amino Acid:
SEGQHMTYSHSPHAPHGCER
Intron Amino Acid Position:
241

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
72.8
38.9
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
71.9
0.49
1
65.6
41
Minor 5ss
45.6
-0.5
3.4
74.4
41.8
Minor BPS
47.5
-0.1
2
61.28
44.5

Associated Gene:

Gene:
TBX19
Ensembl Gene ID:
ENSAPLG00000010506
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010947
86818351 - 86830737
12387