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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_86821309_86822421_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
86821309 - 86822421
Intron Length:
1113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
GAATTTTTACCA
Flanking Amino Acid:
FAKAFLDAKERNHPKDAPEA
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.8
1.01
0.7
85.4
19.4
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
96.8
1.05
0.5
96.1
13.2
Minor 5ss
34.1
-1.8
2.8
39.9
46.1
Minor BPS
54.8
0.15
1.6
61.53
38.5

Associated Gene:

Gene:
TBX19
Ensembl Gene ID:
ENSAPLG00000010506
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010947
86818351 - 86830737
12387