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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_86823451_86825348_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
86823451 - 86825348
Intron Length:
1898

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGCCT
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGGCAAT
U12 Branch Point Sequence:
GTTCTGTTTTCT
Flanking Amino Acid:
LTNKLNGSGQIMLNSLHKYE
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
68.7
41.8
Major BPS
48.6
-0
1.5
56.5
46.9
Major PPT
85.3
0.79
0.8
80.7
31.4
Minor 5ss
39.5
-1.2
3.3
57
47.3
Minor BPS
34.5
-1.1
3.8
65.67
44.7

Associated Gene:

Gene:
TBX19
Ensembl Gene ID:
ENSAPLG00000010506
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010947
86818351 - 86830737
12387