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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_86842137_86842767_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
86842137 - 86842767
Intron Length:
631

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCATC
5'SS Class:
strong_major
3'SS Sequence:
CTCCTGCCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGGTGAT
U12 Branch Point Sequence:
TTTTCTTTCTCC
Flanking Amino Acid:
WYSISFIPFARDAVKKCVSV
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
85.3
32.2
Major BPS
57.3
0.18
1.3
48.8
46.3
Major PPT
71.5
0.48
0.8
65.5
30.4
Minor 5ss
43.9
-0.7
2.9
60.2
44.5
Minor BPS
46.6
-0.2
3.6
77.75
38.7

Associated Gene:

Gene:
SFT2D2
Ensembl Gene ID:
ENSAPLG00000010499
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010927
86842097 - 86847680
5584