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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_86842798_86843495_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
86842798 - 86843495
Intron Length:
698

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCTTCGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ACTTTTTAAAAT
Flanking Amino Acid:
FCILQYFALAWYSISFIPFA
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.2
28.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
81
0.7
0.8
77.3
31.4
Minor 5ss
34.5
-1.8
3.3
45.9
43.7
Minor BPS
53.5
0.19
1.7
70.46
41

Associated Gene:

Gene:
SFT2D2
Ensembl Gene ID:
ENSAPLG00000010499
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010927
86842097 - 86847680
5584