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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_86845775_86846906_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
86845775 - 86846906
Intron Length:
1132

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACAATC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTCCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTTGTCTTATGT
Flanking Amino Acid:
YTLGNIASIGSTLFLMGPMK
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1.1
79
35.3
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
85.9
0.81
0.7
84.9
29.9
Minor 5ss
43.6
-0.7
2.9
61
43.6
Minor BPS
55.9
0.26
2
78.81
43.9

Associated Gene:

Gene:
SFT2D2
Ensembl Gene ID:
ENSAPLG00000010499
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010927
86842097 - 86847680
5584