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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_86852294_86853017_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
86852294 - 86853017
Intron Length:
724

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAACCCG
5'SS Class:
major
3'SS Sequence:
TTTTCCCCATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTGTAATTAATT
Flanking Amino Acid:
RMNDTRLHHEADKAYMLREY
Intron Amino Acid Position:
204

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.1
59.6
45.1
Major BPS
83
0.82
0.8
82
24.9
Major PPT
76.1
0.59
0.8
76.1
27.7
Minor 5ss
37.5
-1.4
3.1
48.4
47.3
Minor BPS
64
0.52
1.8
82.28
39

Associated Gene:

Gene:
TIPRL
Ensembl Gene ID:
ENSAPLG00000010457
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010920
86850897 - 86859355
8459