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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_86853114_86853515_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
86853114 - 86853515
Intron Length:
402

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTGAGTACA
5'SS Class:
major
3'SS Sequence:
TTTATTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATGTGCTGAATC
Flanking Amino Acid:
HGVSSLSVKIRVMPSSFFVL
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
72.2
32.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
91.7
0.94
0.7
84.7
35.8
Minor 5ss
32.4
-2
2.6
36.4
34.8
Minor BPS
53.9
0.1
1.9
65.48
40.5

Associated Gene:

Gene:
TIPRL
Ensembl Gene ID:
ENSAPLG00000010457
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010920
86850897 - 86859355
8459