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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_86856270_86859254_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
86856270 - 86859254
Intron Length:
2985

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGCGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTATGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTATTTATCA
Flanking Amino Acid:
THIMKSAQAERLAEELHMPS
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
60.4
45.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
89
0.88
0.7
85.5
27.9
Minor 5ss
24.7
-2.9
3
29.5
43.3
Minor BPS
65.8
0.49
1.7
80.18
35.8

Associated Gene:

Gene:
TIPRL
Ensembl Gene ID:
ENSAPLG00000010457
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010920
86850897 - 86859355
8459