Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_86874316_86875700_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

86874316 - 86875700

Intron Length:

1385

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCA|GTAAGTTCC

5'SS Class:

major

3'SS Sequence:

TATTCTTTTGTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCAAAT

U12 Branch Point Sequence:

TCTTGCTTTATT

Flanking Amino Acid:

LVQQQDRDEYQLFYRCINSK

Intron Amino Acid Position:

105

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.4

0.62

69.9

35.6

Major BPS

77.3

0.68

81.5

Major PPT

85.3

0.79

0.7

81.3

30.2

Minor 5ss

43.7

-0.7

2.7

59.7

38.5

Minor BPS

58.9

0.36

2.1

79.54

Associated Gene:

Gene:

TTF2

Ensembl Gene ID:

ENSAPLG00000010324

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010782

86873167 - 86893551

20385

ENSAPLT00000027819

86873167 - 86892570

19404