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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_86878047_86878963_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
86878047 - 86878963
Intron Length:
917

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTCTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TCACCCTGAATT
Flanking Amino Acid:
NISTTDTAEKGEDGASGGCC
Intron Amino Acid Position:
493

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
82.5
37
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
78.5
0.64
0.9
83.2
25.7
Minor 5ss
36.7
-1.5
3.5
55.8
48.4
Minor BPS
64.5
0.53
1.4
75.5
41

Associated Gene:

Gene:
TTF2
Ensembl Gene ID:
ENSAPLG00000010324
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027819
86873167 - 86892570
19404
ENSAPLT00000010782
86873167 - 86893551
20385