About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_86882950_86883962_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
86882950 - 86883962
Intron Length:
1013

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGAAGC
5'SS Class:
major
3'SS Sequence:
CTTTTTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TTTTTCTTACAG
Flanking Amino Acid:
EVPAEDHELGSGSSPCSPLL
Intron Amino Acid Position:
761

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
65.9
40.1
Major BPS
78.6
0.71
1
78.6
31
Major PPT
92.5
0.96
0.6
87.6
22.8
Minor 5ss
27.9
-2.5
2.8
26.7
36.3
Minor BPS
63.2
0.28
1.8
72.05
40.8

Associated Gene:

Gene:
TTF2
Ensembl Gene ID:
ENSAPLG00000010324
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027819
86873167 - 86892570
19404
ENSAPLT00000010782
86873167 - 86893551
20385