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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_86884154_86885016_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
86884154 - 86885016
Intron Length:
863

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGTGA
5'SS Class:
strong_major
3'SS Sequence:
CCTCCTGTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
GTTTCCTTACCT
Flanking Amino Acid:
NNLLDVYSLLRFLRCSPFDE
Intron Amino Acid Position:
824

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.9
71.8
36.2
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
73.7
0.53
0.8
68.4
31.8
Minor 5ss
30.7
-2.2
3.2
38
46.8
Minor BPS
79.3
1
1.5
92.9
35.6

Associated Gene:

Gene:
TTF2
Ensembl Gene ID:
ENSAPLG00000010324
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027819
86873167 - 86892570
19404
ENSAPLT00000010782
86873167 - 86893551
20385