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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_86885171_86885470_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
86885171 - 86885470
Intron Length:
300

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTACTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
GTATTTTTACTT
Flanking Amino Acid:
DQLDAAGKPLVSLPQRSMQL
Intron Amino Acid Position:
876

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
79.9
32.8
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
85.2
0.79
0.8
83
32.8
Minor 5ss
36.3
-1.6
3
48
41.5
Minor BPS
58.4
0.34
1.6
72.55
39.1

Associated Gene:

Gene:
TTF2
Ensembl Gene ID:
ENSAPLG00000010324
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010782
86873167 - 86893551
20385
ENSAPLT00000027819
86873167 - 86892570
19404