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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_86889780_86891366_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
86889780 - 86891366
Intron Length:
1587

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
TTGTCCTTTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
GCTTCTTAAATT
Flanking Amino Acid:
EFNNNPKGPQVMLVSLLAGG
Intron Amino Acid Position:
1109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.5
1
0.8
87.7
27.9
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
74.5
0.55
1
75.6
33.2
Minor 5ss
33.9
-1.8
3.3
47.8
47.9
Minor BPS
63.2
0.49
1.7
75.88
41.7

Associated Gene:

Gene:
TTF2
Ensembl Gene ID:
ENSAPLG00000010324
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010782
86873167 - 86893551
20385
ENSAPLT00000027819
86873167 - 86892570
19404