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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_86903924_86904437_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
86903924 - 86904437
Intron Length:
514

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGCA
5'SS Class:
strong_major
3'SS Sequence:
GTCTGTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
ATTTCACAGACT
Flanking Amino Acid:
SILMSLPLTARLTSVPLLSL
Intron Amino Acid Position:
393

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.9
75.8
33.8
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
81.3
0.7
0.9
72.5
42.4
Minor 5ss
29.5
-2.3
3.4
38.8
46.5
Minor BPS
47.6
-0.1
2.2
75.77
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010306
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027846
86903537 - 86910893
7357